CDS

Accession Number TCMCG057C38458
gbkey CDS
Protein Id XP_018446518.1
Location join(1344819..1345026,1345107..1345264,1345418..1345524,1345607..1345707,1345798..1345874,1345954..1346304,1346385..1346501,1346591..1346665,1346755..1346832,1346927..1346986,1347062..1347124,1347193..1347337,1347420..1347558,1347636..1347713,1347793..1347952,1348031..1348129,1348240..1348344,1348429..1348533)
Gene LOC108818135
GeneID 108818135
Organism Raphanus sativus

Protein

Length 741aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018591016.1
Definition PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category I
Description GcpE protein
KEGG_TC -
KEGG_Module M00096        [VIEW IN KEGG]
KEGG_Reaction R08689        [VIEW IN KEGG]
R10859        [VIEW IN KEGG]
KEGG_rclass RC01486        [VIEW IN KEGG]
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
KEGG_ko ko:K03526        [VIEW IN KEGG]
EC 1.17.7.1        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
1.17.7.3        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko00900        [VIEW IN KEGG]
ko01100        [VIEW IN KEGG]
ko01110        [VIEW IN KEGG]
ko01130        [VIEW IN KEGG]
map00900        [VIEW IN KEGG]
map01100        [VIEW IN KEGG]
map01110        [VIEW IN KEGG]
map01130        [VIEW IN KEGG]
GOs GO:0001101        [VIEW IN EMBL-EBI]
GO:0002376        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006081        [VIEW IN EMBL-EBI]
GO:0006082        [VIEW IN EMBL-EBI]
GO:0006090        [VIEW IN EMBL-EBI]
GO:0006629        [VIEW IN EMBL-EBI]
GO:0006644        [VIEW IN EMBL-EBI]
GO:0006720        [VIEW IN EMBL-EBI]
GO:0006793        [VIEW IN EMBL-EBI]
GO:0006796        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006952        [VIEW IN EMBL-EBI]
GO:0006955        [VIEW IN EMBL-EBI]
GO:0007154        [VIEW IN EMBL-EBI]
GO:0007165        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008299        [VIEW IN EMBL-EBI]
GO:0008610        [VIEW IN EMBL-EBI]
GO:0008654        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009240        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009526        [VIEW IN EMBL-EBI]
GO:0009532        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009570        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009607        [VIEW IN EMBL-EBI]
GO:0009617        [VIEW IN EMBL-EBI]
GO:0009627        [VIEW IN EMBL-EBI]
GO:0009719        [VIEW IN EMBL-EBI]
GO:0009725        [VIEW IN EMBL-EBI]
GO:0009751        [VIEW IN EMBL-EBI]
GO:0009814        [VIEW IN EMBL-EBI]
GO:0009862        [VIEW IN EMBL-EBI]
GO:0009863        [VIEW IN EMBL-EBI]
GO:0009941        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0014070        [VIEW IN EMBL-EBI]
GO:0016491        [VIEW IN EMBL-EBI]
GO:0016725        [VIEW IN EMBL-EBI]
GO:0019288        [VIEW IN EMBL-EBI]
GO:0019637        [VIEW IN EMBL-EBI]
GO:0019682        [VIEW IN EMBL-EBI]
GO:0019752        [VIEW IN EMBL-EBI]
GO:0023052        [VIEW IN EMBL-EBI]
GO:0031967        [VIEW IN EMBL-EBI]
GO:0031975        [VIEW IN EMBL-EBI]
GO:0032787        [VIEW IN EMBL-EBI]
GO:0032870        [VIEW IN EMBL-EBI]
GO:0035690        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0042493        [VIEW IN EMBL-EBI]
GO:0043207        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043436        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044255        [VIEW IN EMBL-EBI]
GO:0044281        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044434        [VIEW IN EMBL-EBI]
GO:0044435        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045087        [VIEW IN EMBL-EBI]
GO:0046429        [VIEW IN EMBL-EBI]
GO:0046490        [VIEW IN EMBL-EBI]
GO:0046677        [VIEW IN EMBL-EBI]
GO:0048037        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051536        [VIEW IN EMBL-EBI]
GO:0051539        [VIEW IN EMBL-EBI]
GO:0051540        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051707        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0052592        [VIEW IN EMBL-EBI]
GO:0055114        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070887        [VIEW IN EMBL-EBI]
GO:0071229        [VIEW IN EMBL-EBI]
GO:0071236        [VIEW IN EMBL-EBI]
GO:0071310        [VIEW IN EMBL-EBI]
GO:0071407        [VIEW IN EMBL-EBI]
GO:0071446        [VIEW IN EMBL-EBI]
GO:0071495        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090407        [VIEW IN EMBL-EBI]
GO:0098542        [VIEW IN EMBL-EBI]
GO:1901135        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1901700        [VIEW IN EMBL-EBI]
GO:1901701        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCGACTGGGGTATTGCCAGCTCCCTTCTCCGGGGTCAACATCTCGGATTCGAAGCTCGGATTTGGTAAAAGCATGAGTATTGTGAGGATTTGTGATTTGGGGAGCTTAAGATCTGCAAGAAGAAGAGTTTCAGTGATCCGGAGTTCGAATCAAGGCTCTGATTTAGCCGAGCTTCAACCTGCTTCTGAAGGAAGCCCTCTCTTAGTGCCAAGGCAGAAATATTGCGAGTCATTGAATAAGACGGTGAGAAGGAAGACTCGTACTGTTATGGTTGGAGATGTCGCCCTTGGCAGCGACCATCCCATAAGGATCCAAACCATGACTACTTCCGATACCAAGGATGTTGCCGCTACTGTTGACGAGGTAATGAGAATAGCGGATAGAGGAGCGGACATTGTGAGGATCACTGTTCAAGGGAAGAAAGAGGCTGACGCATGCTTTGAAATCAAAGATAAACTTGTTCAGCTTAATTACAATATACCACTTGTGGCGGATATTCATTTTGCGCCTGCTGTAGCATTGCGTGTAGCTGAATGCTTTGACAAGATCCGCGTCAACCCCGGAAACTTTGCGGACAGAAGGGCACAGTTTGAGACGATAGAGTACACAGAAGATGAATACCAGAAAGAACTTCAGCATATCGAGCAGGTCTTCACTCCTTTAGTTGAGAAATGCAAAAAGTATGGGAGAGCAATGCGTATAGGGACAAACCATGGAAGTCTTTCTGACCGTATCATGAGCTATTATGGTGACTCTCCACGAGGAATGGTTGAATCAGCGTTTGAGTTTGCACGGATATGTCGGAAACTAGACTACCACAACTTTGTTTTCTCGATGAAAGCGAGCAACCCGGTGATCATGGTCCAGGCGTACCGTTTACTCGTGGCTGAGATGTATGTTCACGGATGGGATTATCCTCTGCATTTGGGAGTCACTGAGGCTGGAGAAGGTGAAGATGGACGGATGAAATCTGCCATTGGGATTGGGACGCTTCTTCAGGATGGACTTGGTGACACTATAAGAGTTTCGCTGACTGAGCCACCAGAAGAGGAGATTGATCCGTGTAAGCGATTGGCCAATCTCGGGACAAAAGCTGCTGAGCTTCAACAAGGCGTTGCACCGTTTGAAGAGAAGCATAGGCATTACTTTGATTTTCAGCGTAGGACAGGTGATCTACCTGTACAAAAAGAGGGAGAAGAGGTTGATTACAGAAACGTCCTTCACCGTGATGGTTCTGTTCTGATGACGGTTTCTCTAGATCAACTTAAGACACCTGAATTCCTCTACAGATCTCTCGCTACAAAGCTTGTCGTGGGGATGCCATTCAAGGATCTGGCAACAGTTGATTCAATCTTACTAAGAGAGCTTCCACCTGTAGATGATCACGTTGCTCGTCTGGCTCTTAAACGGTTGATTGATGTGAGTATGGGAGTCATAACTCCTTTATCAGAGCAACTCACAAAGCCTTTGCCCAATGCAATGGTTCTTGTCAACCTCAAGGAACTATCTGGTGGTGCTTACAAGCTTCTCCCTGAAGGTACACGCTTGGTTGTCTCTGTACGAGGTGATGAGCCATACGAGGAGCTTGAAGTGCTCAAGAACATTGATGCTACTATGATTCTCCATGATGTACCCTTCAATGAAGACAAAGTTAGCAGAGTACACGCAGCTCGGAGACTATTCGAGTTCCTATCCGAGAATTCAGTTAATTTTCCCGTCATTCACCACATTAACTTCCCAACAGGGATTCACAGGGACGAGTTGGTGATCCACGCAGGGACATACGCTGGAGCACTTCTAGTGGACGGACTTGGAGATGGTGTAATGCTAGAAGCACCTGATCAAGACTTCGAGTTCCTTAGGAACACTTCTTTCAACTTGTTACAAGGCTGCAGGATGCGTAACACCAAGACGGAATACGTATCGTGCCCGTCTTGTGGAAGAACTCTGTTCGACTTGCAAGAGATCAGCGCTGAGATCAGAGAAAAGACTTCACATTTGCCTGGCGTTTCGATTGCAATAATGGGTTGCATTGTGAATGGACCTGGAGAAATGGCTGATGCTGATTTCGGTTATGTAGGCGGTTCTCCCGGGAAAATCGATCTTTACGTTGGAAAGACGGTGGTGAAGCGTGGGATTGCCATGTCGGAGGCAACTGATGCTCTGATTGGTCTGATCAAAGAACATGGTCGTTGGGTCGACCCGCCTGTTGCTGATGAGTAG
Protein:  
MATGVLPAPFSGVNISDSKLGFGKSMSIVRICDLGSLRSARRRVSVIRSSNQGSDLAELQPASEGSPLLVPRQKYCESLNKTVRRKTRTVMVGDVALGSDHPIRIQTMTTSDTKDVAATVDEVMRIADRGADIVRITVQGKKEADACFEIKDKLVQLNYNIPLVADIHFAPAVALRVAECFDKIRVNPGNFADRRAQFETIEYTEDEYQKELQHIEQVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVIMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCKRLANLGTKAAELQQGVAPFEEKHRHYFDFQRRTGDLPVQKEGEEVDYRNVLHRDGSVLMTVSLDQLKTPEFLYRSLATKLVVGMPFKDLATVDSILLRELPPVDDHVARLALKRLIDVSMGVITPLSEQLTKPLPNAMVLVNLKELSGGAYKLLPEGTRLVVSVRGDEPYEELEVLKNIDATMILHDVPFNEDKVSRVHAARRLFEFLSENSVNFPVIHHINFPTGIHRDELVIHAGTYAGALLVDGLGDGVMLEAPDQDFEFLRNTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGSPGKIDLYVGKTVVKRGIAMSEATDALIGLIKEHGRWVDPPVADE